SRX2661249
CENP-A ChIP-seq: IP sample for 93T449 WDLPS cell line

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Adipocyte
Cell type
93T449
Tissue
Retroperitoneum
Disease
Liposarcoma; Well-Differentiated

Attributes by original data submitter

Sample

isolate
primary retroperitoneal WDLPS of a 68-year-old woman at onset
age
68 years
biomaterial_provider
Centre Hospitalier Universitaire de Nice (France)
sex
female
tissue
primary retroperitoneal WDLPS tissue
cell_line
93T449
cell_type
WDLPS
disease
well-differentiated liposarcoma
sample_type
cell line

Sequenced DNA Library

library_name
93T449_CENPA_IP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
144772571
Reads aligned (%)
98.1
Duplicates removed (%)
35.6
Number of peaks
8627 (qval < 1E-05)

hg19

Number of total reads
144772571
Reads aligned (%)
93.2
Duplicates removed (%)
40.1
Number of peaks
1113 (qval < 1E-05)

Base call quality data from DBCLS SRA