SRX2661248
CENP-A ChIP-seq: IP sample for 94T778 WDLPS cell line

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Adipocyte
Cell type
94T778
Tissue
Retroperitoneum; Recurring
Cell Type
Fibroblast
Disease
Liposarcoma; Well-Differentiated

Attributes by original data submitter

Sample

isolate
retroperitoneal WDLPS of a 68-year-old woman at relapse
age
69 years
biomaterial_provider
Centre Hospitalier Universitaire de Nice (France)
sex
female
tissue
retroperitoneal WDLPS at relapse
cell_line
94T778
cell_type
WDLPS
disease
well-differentiated liposarcoma
sample_type
cell line

Sequenced DNA Library

library_name
94T778_CENPA_IP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
124577239
Reads aligned (%)
97.9
Duplicates removed (%)
21.3
Number of peaks
6803 (qval < 1E-05)

hg19

Number of total reads
124577239
Reads aligned (%)
94.8
Duplicates removed (%)
24.9
Number of peaks
1010 (qval < 1E-05)

Base call quality data from DBCLS SRA