Antigen

Antigen Class

TFs and others

Antigen

Nr3c1

Cell type

Cell type Class

Liver

Cell type

Liver

MeSH Description

A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Sample

GEO Accession

GSM1122512

genetic background

C57BL/6

gender

male

tissue

liver

treatment

dex

replicate

rep1

chip antibody

cocktail of PA-510A and PA-511A from Affinity BioReagents and sc-1004 from Santa Cruz

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Lysates were clarified from sonicated nuclei and DNA complexes were isolated with antibody.

Sequencing Platform

instrument_model

Illumina Genome Analyzer

mm10

Number of total reads

25991601

Reads aligned (%)

41.1

Duplicates removed (%)

25.7

Number of peaks

24596 (qval < 1E-05)

mm9

Number of total reads

25991601

Reads aligned (%)

41.1

Duplicates removed (%)

26.0

Number of peaks

24562 (qval < 1E-05)