Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CBFB

Cell type

Cell type Class
Blood
Cell type
U-937
Primary Tissue
Blood
Tissue Diagnosis
Lymphoma Diffuse Large B Cell

Attributes by original data submitter

Sample

source_name
U937CM cell line (leukemic)
cell type
leukemic cell line
cell line
U937CM
antibody target
CBFB
antibody company
Diagenode
antibody catalogue number
A1329
treatment
3 days Tet free medium

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin was sonicated and used for ChIP seq using specific antibodies (avialable on suplementry table). Libraries were prepared according to Illumina's standard protocol.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
26116007
Reads aligned (%)
54.3
Duplicates removed (%)
44.4
Number of peaks
3918 (qval < 1E-05)

hg38

Number of total reads
26116007
Reads aligned (%)
55.8
Duplicates removed (%)
43.3
Number of peaks
3753 (qval < 1E-05)

Base call quality data from DBCLS SRA