Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TBP

Cell type

Cell type Class
Blood
Cell type
ME-1
Primary Tissue
Bone Marrow
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
ME-1 cell line (leukemic)
cell type
leukemic cell line
cell line
ME-1
antibody target
TBP
antibody company
Diagenode
antibody catalogue number
MAb-002-100
treatment
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin was sonicated and used for ChIP seq using specific antibodies (avialable on suplementry table). Libraries were prepared according to Illumina's standard protocol.

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
17871849
Reads aligned (%)
48.0
Duplicates removed (%)
45.1
Number of peaks
7935 (qval < 1E-05)

hg38

Number of total reads
17871849
Reads aligned (%)
49.1
Duplicates removed (%)
44.3
Number of peaks
7951 (qval < 1E-05)

Base call quality data from DBCLS SRA