Antigen

Antigen Class

Unclassified

Antigen

Unclassified

Cell type

Cell type Class

Liver

Cell type

Hepatocytes

MeSH Description

The main structural component of the LIVER. They are specialized EPITHELIAL CELLS that are organized into interconnected plates called lobules.

Sample

source_name

primary mouse hepatocytes

strain

C57BL/6

tissue

primary hepatocytes

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

crosslinked material was lyzed and sonicated. Chromatin precipitated with antibody and DNA was purified by ethanol precipitation sequencing libraries were generated using Illumina TruSeq V3 protocol and subject to 50 bp single-end sequencing on Illumina HiSeq2000.

Sequencing Platform

instrument_model

Illumina HiSeq 2000

mm10

Number of total reads

31647701

Reads aligned (%)

93.6

Duplicates removed (%)

36.4

Number of peaks

30793 (qval < 1E-05)

mm9

Number of total reads

31647701

Reads aligned (%)

93.4

Duplicates removed (%)

36.5

Number of peaks

30834 (qval < 1E-05)