Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRD4

Cell type

Cell type Class
Epidermis
Cell type
Melanoma
MeSH Description
A malignant neoplasm derived from cells that are capable of forming melanin, which may occur in the skin of any part of the body, in the eye, or, rarely, in the mucous membranes of the genitalia, anus, oral cavity, or other sites. It occurs mostly in adults and may originate de novo or from a pigmented nevus or malignant lentigo. Melanomas frequently metastasize widely, and the regional lymph nodes, liver, lungs, and brain are likely to be involved. The incidence of malignant skin melanomas is rising rapidly in all parts of the world. (Stedman, 25th ed; from Rook et al., Textbook of Dermatology, 4th ed, p2445)

Attributes by original data submitter

Sample

GEO Accession
GSM1121100
chip antibody
Brd4
antibody catalog number
Bethyl A301-985A
cell type
Melanoma

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
37435145
Reads aligned (%)
80.7
Duplicates removed (%)
16.7
Number of peaks
964 (qval < 1E-05)

hg38

Number of total reads
37435145
Reads aligned (%)
82.6
Duplicates removed (%)
15.4
Number of peaks
737 (qval < 1E-05)

Base call quality data from DBCLS SRA