Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells
cell type
Embryonic stem cells
passages
10-20
strain
129/Ola
antibody
H3K4me3 (mouse monoclonal antibody provided by Dr. H. Kimura using in Hayashi-Takanaka,Y et al., Nucleic Acids Research, 2011. )

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. ChIP libraries were prepared using the NEBNext Ultra DNA Library Prep Kit for Illumina (New England Biolabs) according to manufacturer's instructions.

Sequencing Platform

instrument_model
Illumina HiSeq 1000

mm10

Number of total reads
24109413
Reads aligned (%)
94.8
Duplicates removed (%)
47.4
Number of peaks
27337 (qval < 1E-05)

mm9

Number of total reads
24109413
Reads aligned (%)
94.3
Duplicates removed (%)
47.4
Number of peaks
27294 (qval < 1E-05)

Base call quality data from DBCLS SRA