SRX2642671
GSM2537609: ctrlhp 3; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Neural
Cell type
Neural progenitor cells
NA
NA

Attributes by original data submitter

Sample

source_name
Neural progenitor cells
cell type
Neural progenitor cells
line
OF4106
Sex
female
age
--

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
DNA was purified using Qiagen Qiaquick PCR purification kit and quantified using a Qubit Fluorometer according to the manufacturer’s instructions. Libraries were prepared using previously published protocols (PMID: 25559105)

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
52914560
Reads aligned (%)
76.7
Duplicates removed (%)
44.4
Number of peaks
20708 (qval < 1E-05)

hg19

Number of total reads
52914560
Reads aligned (%)
76.2
Duplicates removed (%)
45.4
Number of peaks
20509 (qval < 1E-05)

Base call quality data from DBCLS SRA