SRX264236
GSM1120741: input lysate Bach2 WT; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
primary CD4+ T cells from spleen and lymph nodes
strain
C57BL/6J
genotype/variation
wild type
cell type
in vitro polarized inducible regulatory cells for 3 days
passages
FACS sorted naive CD4+T cells cultured in vitro for 3 days under iTreg condition
chip antibody
none (input lysate)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
39464312
Reads aligned (%)
99.0
Duplicates removed (%)
20.5
Number of peaks
2422 (qval < 1E-05)

mm9

Number of total reads
39464312
Reads aligned (%)
98.8
Duplicates removed (%)
20.6
Number of peaks
2268 (qval < 1E-05)

Base call quality data from DBCLS SRA