SRX263914
Reference Epigenome: ChIP-Seq Analysis of H3K9me3 in Human Sigmoid Colon Tissue

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Digestive tract
Cell type
Colon
Tissue
Colon
Lineage
Tissue
Description
Colon

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
Shin Lin, Stanford University
BIOMATERIAL_TYPE
Primary Tissue
TISSUE_TYPE
Sigmoid Colon
TISSUE_DEPOT
N/A
COLLECTION_METHOD
Autopsy
DONOR_ID
STL001
DONOR_AGE
3
DONOR_HEALTH_STATUS
healthy, no prior medical history (NO diabetes, hypertension, coronary artery disease, cancer)
DONOR_SEX
male
DONOR_ETHNICITY
Caucasian and African American
sample_term_id
UBERON_0001159

Sequenced DNA Library

library_name
CY189
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
53522297
Reads aligned (%)
92.4
Duplicates removed (%)
10.3
Number of peaks
3340 (qval < 1E-05)

hg19

Number of total reads
53522297
Reads aligned (%)
90.3
Duplicates removed (%)
14.9
Number of peaks
2213 (qval < 1E-05)

Base call quality data from DBCLS SRA