Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
in-vitro differentiated neural progenitor cells (NPC)
tissue
in-vitro differentiated neural progenitor cells (NPC)
strain/genotype
Sox1-GFP
sorting
GFP+

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
103138782
Reads aligned (%)
97.0
Duplicates removed (%)
41.3
Number of peaks
1549 (qval < 1E-05)

mm9

Number of total reads
103138782
Reads aligned (%)
96.5
Duplicates removed (%)
42.8
Number of peaks
1644 (qval < 1E-05)

Base call quality data from DBCLS SRA