SRX2636514
GSM2534637: ChIP-seq from gastrocnemius medialis (ENCLB219HOL); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Muscle
Cell type
Gastrocnemius medialis
NA
NA

Attributes by original data submitter

Sample

dev stage
adult
sex
male
sample type
tissue
donor ID
ENCDO845WKR
age
37 year
lab
Bradley Bernstein, Broad
tissue
gastrocnemius medialis

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
49197240
Reads aligned (%)
97.7
Duplicates removed (%)
9.0
Number of peaks
1646 (qval < 1E-05)

hg19

Number of total reads
49197240
Reads aligned (%)
96.2
Duplicates removed (%)
10.6
Number of peaks
1307 (qval < 1E-05)

Base call quality data from DBCLS SRA