Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Muscle

Cell type

Gastrocnemius medialis

NA

NA

Sample

dev stage

adult

sex

male

sample type

tissue

donor ID

ENCDO451RUA

age

54 year

lab

Bradley Bernstein, Broad

tissue

gastrocnemius medialis

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

70236195

Reads aligned (%)

98.4

Duplicates removed (%)

30.6

Number of peaks

1500 (qval < 1E-05)

hg19

Number of total reads

70236195

Reads aligned (%)

97.2

Duplicates removed (%)

32.0

Number of peaks

1253 (qval < 1E-05)