Antigen

Antigen Class

Histone

Antigen

H4K20me1

Cell type

Cell type Class

Neural

Cell type

SK-N-SH

Primary Tissue

Brain

Tissue Diagnosis

Neuroblastoma

Sample

age

4 year

dev stage

child

donor ID

ENCDO000ABD

sex

female

sample type

immortalized cell line

cell line

SK-N-SH

lab

Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

71407190

Reads aligned (%)

49.5

Duplicates removed (%)

8.9

Number of peaks

1370 (qval < 1E-05)

hg19

Number of total reads

71407190

Reads aligned (%)

49.0

Duplicates removed (%)

10.6

Number of peaks

1085 (qval < 1E-05)