Antigen

Antigen Class

Histone

Antigen

H3K4me2

Cell type

Cell type Class

Blood

Cell type

KARPAS-422

Primary Tissue

Blood

Tissue Diagnosis

Lymphoma Non-Hodgkins

Sample

age

73 year

dev stage

adult

donor ID

ENCDO354AAA

sex

female

health state

human B cell non-Hodgkin's lymphoma

sample type

immortalized cell line

cell line

Karpas-422

lab

Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

extraction method: see document general protocol: https://www.encodeproject.org/documents/a47aaf7e-38f5-4326-914a-98991f61345a/@@download/attachment/Alon%27s%20SCN%20revised.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

31259340

Reads aligned (%)

98.2

Duplicates removed (%)

51.3

Number of peaks

31790 (qval < 1E-05)

hg19

Number of total reads

31259340

Reads aligned (%)

97.9

Duplicates removed (%)

51.7

Number of peaks

31726 (qval < 1E-05)