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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: Fetal neuroepithelial cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX2636369
GSM2534462: ChIP-seq from neuroepithelial stem cell (ENCLB211AGJ); Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Neural
Cell type
Fetal neuroepithelial cells
NA
NA
Attributes by original data submitter
Sample
dev stage
embryonic
cell type
neuroepithelial stem cell
sex
female
sample type
in vitro differentiated cells
donor ID
ENCDO222AAA
age
5 day
health state
healthy
passage number
0
lab
Bradley Bernstein, Broad
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/a47aaf7e-38f5-4326-914a-98991f61345a/@@download/attachment/Alon%27s%20SCN%20revised.pdf
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
49837167
Reads aligned (%)
94.6
Duplicates removed (%)
3.9
Number of peaks
1525 (qval < 1E-05)
hg19
Number of total reads
49837167
Reads aligned (%)
93.6
Duplicates removed (%)
5.2
Number of peaks
1480 (qval < 1E-05)
Base call quality data from
DBCLS SRA