Antigen

Antigen Class

Histone

Antigen

H3K27ac

Cell type

Cell type Class

Neural

Cell type

SK-N-MC

Primary Tissue

Brain

Site of Extraction

Brain

Tissue Diagnosis

neuroepithelioma

Sample

dev stage

child

cell line

SK-N-MC

sex

female

sample type

immortalized cell line

donor ID

ENCDO000ABC

age

14 year

health state

Ewing's sarcoma

lab

Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

44546094

Reads aligned (%)

97.9

Duplicates removed (%)

6.8

Number of peaks

33167 (qval < 1E-05)

hg19

Number of total reads

44546094

Reads aligned (%)

97.5

Duplicates removed (%)

6.9

Number of peaks

32745 (qval < 1E-05)