ChIP-Atlas: SRX2636305

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Histone
Antigen: H3K4me3

Cell type

Cell type Class: Unclassified
Cell type: Unclassified
NA: NA

Attributes by original data submitter

Sample

dev stage: adult
cell line: ACC112
sex: male
sample type: immortalized cell line
donor ID: ENCDO085ZKK
age: 70 year
health state: submaxillar tumor
lab: Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP
library_construction_protocol: extraction method: see document general protocol: https://www.encodeproject.org/documents/18f0d330-5799-45f7-babe-7728dfbd1103/@@download/attachment/Epigenomics_Mag%20Bead_ChIP_Protocol_v01.4_exp.pdf

Sequencing Platform

instrument_model: Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads: 34013778
Reads aligned (%): 94.7
Duplicates removed (%): 5.9
Number of peaks: 41599 (qval < 1E-05)

hg19

Number of total reads: 34013778
Reads aligned (%): 93.9
Duplicates removed (%): 7.3
Number of peaks: 41463 (qval < 1E-05)

Base call quality data from DBCLS SRA