Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Neural
Cell type
Fetal neural cells
NA
NA

Attributes by original data submitter

Sample

dev stage
embryonic
cell type
neural cell
sex
male
sample type
in vitro differentiated cells
donor ID
ENCDO000AAW
age
unknown
health state
healthy
passage number
42
lab
Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
extraction method: see document general protocol: https://www.encodeproject.org/documents/97a73f1c-6372-4dd2-b275-0b8e855cbd5a/@@download/attachment/Cell_Paper_ChIP_protocol.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
58095892
Reads aligned (%)
91.9
Duplicates removed (%)
26.8
Number of peaks
30718 (qval < 1E-05)

hg19

Number of total reads
58095892
Reads aligned (%)
91.6
Duplicates removed (%)
27.2
Number of peaks
30603 (qval < 1E-05)

Base call quality data from DBCLS SRA