Antigen

Antigen Class

Histone

Antigen

H3K9me3

Cell type

Cell type Class

Lung

Cell type

PC-9

Primary Tissue

Lung

Tissue Diagnosis

Adenocarcinoma

Sample

dev stage

unknown

cell line

PC-9

sex

not collected

sample type

immortalized cell line

donor ID

ENCDO647UHQ

age

unknown

lab

Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

41779808

Reads aligned (%)

97.0

Duplicates removed (%)

2.3

Number of peaks

1949 (qval < 1E-05)

hg19

Number of total reads

41779808

Reads aligned (%)

95.6

Duplicates removed (%)

3.4

Number of peaks

573 (qval < 1E-05)