SRX2636007
GSM2533993: ChIP-seq from PC-9 (ENCLB830JFM); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K36me3

Cell type

Cell type Class
Lung
Cell type
PC-9
Primary Tissue
Lung
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

dev stage
unknown
cell line
PC-9
sex
not collected
sample type
immortalized cell line
donor ID
ENCDO647UHQ
age
unknown
lab
Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
48978691
Reads aligned (%)
97.9
Duplicates removed (%)
4.3
Number of peaks
1521 (qval < 1E-05)

hg19

Number of total reads
48978691
Reads aligned (%)
96.9
Duplicates removed (%)
6.3
Number of peaks
1021 (qval < 1E-05)

Base call quality data from DBCLS SRA