SRX2635958
GSM2534092: ChIP-seq from PC-9 (ENCLB169IMT); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me2

Cell type

Cell type Class
Lung
Cell type
PC-9
Primary Tissue
Lung
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

dev stage
unknown
cell line
PC-9
sex
not collected
sample type
immortalized cell line
donor ID
ENCDO647UHQ
age
unknown
lab
Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
35045214
Reads aligned (%)
98.1
Duplicates removed (%)
2.1
Number of peaks
46268 (qval < 1E-05)

hg19

Number of total reads
35045214
Reads aligned (%)
97.4
Duplicates removed (%)
2.4
Number of peaks
45904 (qval < 1E-05)

Base call quality data from DBCLS SRA