SRX2635920
GSM2534020: ChIP-seq from radial glial cell (ENCLB425AMB); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Neural
Cell type
Radial glial cells
NA
NA

Attributes by original data submitter

Sample

dev stage
embryonic
cell type
radial glial cell
sex
female
sample type
in vitro differentiated cells
donor ID
ENCDO222AAA
age
5 day
health state
healthy
passage number
1
lab
Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/a47aaf7e-38f5-4326-914a-98991f61345a/@@download/attachment/Alon%27s%20SCN%20revised.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
31778496
Reads aligned (%)
94.3
Duplicates removed (%)
4.3
Number of peaks
23175 (qval < 1E-05)

hg19

Number of total reads
31778496
Reads aligned (%)
92.9
Duplicates removed (%)
6.4
Number of peaks
22991 (qval < 1E-05)

Base call quality data from DBCLS SRA