Antigen

Antigen Class

Histone

Antigen

H3K9me2

Cell type

Cell type Class

Neural

Cell type

Fetal neural cells

NA

NA

Sample

dev stage

embryonic

cell type

neural cell

sex

male

sample type

in vitro differentiated cells

donor ID

ENCDO000AAW

age

unknown

health state

healthy

passage number

31

lab

Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

31933067

Reads aligned (%)

98.7

Duplicates removed (%)

5.5

Number of peaks

979 (qval < 1E-05)

hg19

Number of total reads

31933067

Reads aligned (%)

97.8

Duplicates removed (%)

6.7

Number of peaks

841 (qval < 1E-05)