Antigen

Antigen Class

Histone

Antigen

H3K36me3

Cell type

Cell type Class

Neural

Cell type

Bipolar spindle neurons

NA

NA

Sample

age

53 year

donor ID

ENCDO336AAA

dev stage

adult

sample type

in vitro differentiated cells

cell type

bipolar spindle neuron

sex

male

lab

Thomas Gingeras, CSHL

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

30942664

Reads aligned (%)

96.5

Duplicates removed (%)

2.5

Number of peaks

1295 (qval < 1E-05)

hg19

Number of total reads

30942664

Reads aligned (%)

95.2

Duplicates removed (%)

2.8

Number of peaks

819 (qval < 1E-05)