Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H4K20me1

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

age
53 year
donor ID
ENCDO336AAA
dev stage
adult
sample type
induced pluripotent stem cell line
sex
male
cell line
induced pluripotent stem cell
lab
Thomas Gingeras, CSHL

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
33643538
Reads aligned (%)
97.2
Duplicates removed (%)
5.8
Number of peaks
661 (qval < 1E-05)

hg19

Number of total reads
33643538
Reads aligned (%)
96.5
Duplicates removed (%)
5.9
Number of peaks
368 (qval < 1E-05)

Base call quality data from DBCLS SRA