Antigen

Antigen Class

Histone

Antigen

H3K27me3

Cell type

Cell type Class

Neural

Cell type

SK-N-MC

Primary Tissue

Brain

Site of Extraction

Brain

Tissue Diagnosis

neuroepithelioma

Sample

dev stage

child

cell line

SK-N-MC

sex

female

sample type

immortalized cell line

donor ID

ENCDO000ABC

age

14 year

health state

Ewing's sarcoma

lab

Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

extraction method: see document general protocol: https://www.encodeproject.org/documents/eaafee87-23f3-4bb4-adb1-585af01db120/@@download/attachment/ChIP%20New%20General%20ChIP%20Protocol%20041510%20v05.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

36568824

Reads aligned (%)

93.7

Duplicates removed (%)

14.3

Number of peaks

269 (qval < 1E-05)

hg19

Number of total reads

36568824

Reads aligned (%)

93.3

Duplicates removed (%)

14.8

Number of peaks

297 (qval < 1E-05)