SRX262832
GSM1118354: Control 15; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryonic fibroblast
Cell type
NIH/3T3
Primary Tissue
Embryo
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
NIH3T3_Control_15
cell line
NIH3T3 fibroblasts
genotype
normal
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
15816360
Reads aligned (%)
6.8
Duplicates removed (%)
60.9
Number of peaks
275 (qval < 1E-05)

mm9

Number of total reads
15816360
Reads aligned (%)
6.7
Duplicates removed (%)
62.1
Number of peaks
277 (qval < 1E-05)

Base call quality data from DBCLS SRA