Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Lmnb1

Cell type

Cell type Class
Breast
Cell type
NMuMG
Tissue
Mammary Gland

Attributes by original data submitter

Sample

source_name
mouse mammary epithelial cells
cell line
NMuMG
chip antibody
Abcam ab16048 GR228534-1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP experiments were performed as previously described (Herranz et al., 2008, PubmedID: 18519590). RNA extraction was performed with GenEluteTM Mammalian Total RNA Miniprep Kit (Sigma-Aldrich). ATAC experiments were performed as previously described (Buenrostro et al., 2013, PubmedID: 24097267). Libraries were prepared according to Illumina instructions.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
53226320
Reads aligned (%)
75.8
Duplicates removed (%)
69.3
Number of peaks
1708 (qval < 1E-05)

mm9

Number of total reads
53226320
Reads aligned (%)
74.9
Duplicates removed (%)
69.2
Number of peaks
1815 (qval < 1E-05)

Base call quality data from DBCLS SRA