SRX262828
GSM1118350: TOTAL H3 15; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3

Cell type

Cell type Class
Embryonic fibroblast
Cell type
NIH/3T3
Primary Tissue
Embryo
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
NIH3T3_TOTAL_H3_15
cell line
NIH3T3 fibroblasts
genotype
normal
chip antibody
Total H3
chip antibody vendor
Abcam

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
373920623
Reads aligned (%)
89.2
Duplicates removed (%)
32.5
Number of peaks
1048 (qval < 1E-05)

mm9

Number of total reads
373920623
Reads aligned (%)
88.8
Duplicates removed (%)
32.3
Number of peaks
1399 (qval < 1E-05)

Base call quality data from DBCLS SRA