SRX262827
GSM1118349: TOTAL H3 03; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3

Cell type

Cell type Class
Embryonic fibroblast
Cell type
NIH/3T3
Primary Tissue
Embryo
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
NIH3T3_TOTAL_H3_03
cell line
NIH3T3 fibroblasts
genotype
normal
chip antibody
Total H3
chip antibody vendor
Abcam

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
358062993
Reads aligned (%)
89.5
Duplicates removed (%)
29.1
Number of peaks
1163 (qval < 1E-05)

mm9

Number of total reads
358062993
Reads aligned (%)
89.2
Duplicates removed (%)
28.9
Number of peaks
1486 (qval < 1E-05)

Base call quality data from DBCLS SRA