SRX262825
GSM1118347: POLIIS5P UO replicate-1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Embryonic fibroblast
Cell type
NIH/3T3
Primary Tissue
Embryo
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
NIH3T3_POLIIS5P_UO
cell line
NIH3T3 fibroblasts
genotype
normal
chip antibody
H14
chip antibody vendor
covance

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
12834650
Reads aligned (%)
98.2
Duplicates removed (%)
44.9
Number of peaks
393 (qval < 1E-05)

mm9

Number of total reads
12834650
Reads aligned (%)
98.0
Duplicates removed (%)
45.1
Number of peaks
478 (qval < 1E-05)

Base call quality data from DBCLS SRA