SRX2627793
SCR2 ChIP

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Uterus
Cell type
Cervix
NA
NA

Attributes by original data submitter

Sample

isolate
cervical cancer cells
age
31
biomaterial_provider
Nakai_lab
sex
female
tissue
cervix
cell_line
immortal cell line

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
44681209
Reads aligned (%)
94.3
Duplicates removed (%)
4.7
Number of peaks
1462 (qval < 1E-05)

hg19

Number of total reads
44681209
Reads aligned (%)
93.5
Duplicates removed (%)
6.6
Number of peaks
1357 (qval < 1E-05)

Base call quality data from DBCLS SRA