SRX262135
GSM1116655: MCF7 DMSO RNAPOLII R1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF7 cells
cell type
breast cancer cell line
cell line
MCF7 cells
antibody
RNA Pol II (AB817, Abcam, Lot#36502-3)
treatment
DMSO

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25912097
Reads aligned (%)
95.9
Duplicates removed (%)
29.2
Number of peaks
19534 (qval < 1E-05)

hg19

Number of total reads
25912097
Reads aligned (%)
95.2
Duplicates removed (%)
29.4
Number of peaks
19935 (qval < 1E-05)

Base call quality data from DBCLS SRA