SRX2614878
GSM2523136: HNE1 H3K27Ac; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Lung
Cell type
HNE-1
NA
NA

Attributes by original data submitter

Sample

source_name
Nasopharyngeal Carcinoma cell line
cell line
HNE1
antibody
H3K27Ac

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
21651018
Reads aligned (%)
99.2
Duplicates removed (%)
10.5
Number of peaks
27149 (qval < 1E-05)

hg19

Number of total reads
21651018
Reads aligned (%)
99.0
Duplicates removed (%)
10.7
Number of peaks
27157 (qval < 1E-05)

Base call quality data from DBCLS SRA