SRX261276
GSM1115993: H3K27ac ChIPSeq EtOH; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF7
cell line
MCF7
cell antibody
H3k27ac
chip vendor/catalog
Abcam, ab4729
treatment
1hr treatment with ethanol

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
15132669
Reads aligned (%)
86.7
Duplicates removed (%)
13.3
Number of peaks
20985 (qval < 1E-05)

hg19

Number of total reads
15132669
Reads aligned (%)
86.3
Duplicates removed (%)
13.7
Number of peaks
20914 (qval < 1E-05)

Base call quality data from DBCLS SRA