Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
INO80

Cell type

Cell type Class
Yeast strain
Cell type
MJE7
NA
NA

Attributes by original data submitter

Sample

source_name
bar1∆, TBP-FRB, Ino80-13Myc
cell type
yeast cells
strain
MJE7 Background
antibody
Anti Myc antibody from Abcam (ab32)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Samples were lysed with glass beads in lysis buffer, chromatin was collected by centrifugation, resuspended in lysis buffer and subjected to sonification. The supernatant from sonicated lysates were precleared with Protein A beads and ChIP was performed as described using commercial antibodies Libraries were prepared with a KAPA LTP kit following the manufacturer's protocol

Sequencing Platform

instrument_model
Illumina HiSeq 4000

sacCer3

Number of total reads
9215470
Reads aligned (%)
69.8
Duplicates removed (%)
68.7
Number of peaks
1280 (qval < 1E-05)

Base call quality data from DBCLS SRA