SRX257672
GSM1111792: HTZ Rep2 ChIPSeq; Caenorhabditis elegans; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
htz-1

Cell type

Cell type Class
Embryo
Cell type
Embryos
NA
NA

Attributes by original data submitter

Sample

source_name
whole worms
strain
N2
developmental stage
embryo
matching input
Input_N2_MxEmb_Rep17
antibody
HTZ1 BK00001 mouse ascites polyclonal against HTZ-1 specific C-terminal peptide N-PGKPGAPGQGPQ-C (PMID:18787694)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

ce11

Number of total reads
22304749
Reads aligned (%)
98.1
Duplicates removed (%)
60.6
Number of peaks
5138 (qval < 1E-05)

ce10

Number of total reads
22304749
Reads aligned (%)
98.1
Duplicates removed (%)
60.6
Number of peaks
5140 (qval < 1E-05)

Base call quality data from DBCLS SRA