SRX256951
GSM1110844: input BrgWT; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

GEO Accession
GSM1110844
cell line
Brgf/f-CreER infected with V5-hTopoIIa and sh mTopoIIa
cell type
Embryonic Stem Cells
genotype/variation
wild-type
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
44872004
Reads aligned (%)
95.7
Duplicates removed (%)
29.8
Number of peaks
630 (qval < 1E-05)

mm9

Number of total reads
44872004
Reads aligned (%)
95.5
Duplicates removed (%)
29.9
Number of peaks
657 (qval < 1E-05)

Base call quality data from DBCLS SRA