SRX256747
GSM1109946: H2ABbd ChIP-seq result; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Mouse ES cells
cell type
mouse ES cells
antibody information
rabbit anti-mH2ABbd (home-made)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
3861555
Reads aligned (%)
91.3
Duplicates removed (%)
59.4
Number of peaks
648 (qval < 1E-05)

mm9

Number of total reads
3861555
Reads aligned (%)
90.5
Duplicates removed (%)
60.0
Number of peaks
662 (qval < 1E-05)

Base call quality data from DBCLS SRA