SRX2564306
GSM2492058: ChIP-Seq-delC-L1-Pol2-rep2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Breast
Cell type
Mammary glands
NA
NA

Attributes by original data submitter

Sample

source_name
Mammary
strain
C57BL/6
tissue
Mammary gland
state
day one of lactation
genotype
CTCF-delC
chip antibody
RNA polymerase II (Abcam, ab5408)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries for sequencing were prepared using standard Illumina protocols.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
35786367
Reads aligned (%)
98.4
Duplicates removed (%)
9.4
Number of peaks
17051 (qval < 1E-05)

mm9

Number of total reads
35786367
Reads aligned (%)
98.3
Duplicates removed (%)
9.5
Number of peaks
17057 (qval < 1E-05)

Base call quality data from DBCLS SRA