SRX255459
GSM1106078: SRSF1 ChIP-seq SRSF2 wildtype; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Epitope tags

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
SRSF1_ChIP_SRSF2wt
cell type
MEF cell line
passages
2~10
chip antibody
anti-HA (ab9110)
molecule type
genomic DNA

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
18481017
Reads aligned (%)
29.1
Duplicates removed (%)
10.2
Number of peaks
177 (qval < 1E-05)

mm9

Number of total reads
18481017
Reads aligned (%)
29.0
Duplicates removed (%)
10.4
Number of peaks
211 (qval < 1E-05)

Base call quality data from DBCLS SRA