SRX254823
GSM1104473: Day4 Suz12 4OHT Rep2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Suz12

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESCs, differentiated
NA
NA

Attributes by original data submitter

Sample

source_name
Differentiated embryonic stem cells
cell line
Brg1f/f; Actin-CreER
timepoint
Day 4
antibody
anti-SUZ12 (Bethyl A302-407A)
brg1 levels
Deleted

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
43800549
Reads aligned (%)
94.2
Duplicates removed (%)
22.4
Number of peaks
3440 (qval < 1E-05)

mm9

Number of total reads
43800549
Reads aligned (%)
93.9
Duplicates removed (%)
22.3
Number of peaks
3347 (qval < 1E-05)

Base call quality data from DBCLS SRA