SRX254804
GSM1104454: Day4 H3K27ac THF Rep2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESCs, differentiated
NA
NA

Attributes by original data submitter

Sample

source_name
Differentiated embryonic stem cells
cell line
Brg1f/f; Actin-CreER
timepoint
Day 4
antibody
anti-H3K27ac (ActiveMotif #39134)
brg1 levels
Normal

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
52404017
Reads aligned (%)
98.7
Duplicates removed (%)
16.7
Number of peaks
46031 (qval < 1E-05)

mm9

Number of total reads
52404017
Reads aligned (%)
98.4
Duplicates removed (%)
16.7
Number of peaks
46018 (qval < 1E-05)

Base call quality data from DBCLS SRA