SRX254800
GSM1104450: Day4 Brg1Flag Rep2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Epitope tags

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESCs, differentiated
NA
NA

Attributes by original data submitter

Sample

source_name
Differentiated embryonic stem cells
cell line
Brg1f/f; Actin-CreER
timepoint
Day 4
antibody
anti-FLAG (Sigma M2 F1804)
brg1 levels
Normal

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
51815227
Reads aligned (%)
95.5
Duplicates removed (%)
12.9
Number of peaks
640 (qval < 1E-05)

mm9

Number of total reads
51815227
Reads aligned (%)
95.3
Duplicates removed (%)
12.9
Number of peaks
702 (qval < 1E-05)

Base call quality data from DBCLS SRA