SRX254615
GSM1104354: HeLaS3.H3K4me1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa S3
cell type
HeLa S3
cell cycle phase
asynchronous population
antibody
H3K4me1
antibody information
Abcam ab8895 (LOT#GR61280-1)
internal reference
110602_lane1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
23572816
Reads aligned (%)
97.9
Duplicates removed (%)
5.3
Number of peaks
40936 (qval < 1E-05)

hg19

Number of total reads
23572816
Reads aligned (%)
97.7
Duplicates removed (%)
5.5
Number of peaks
40841 (qval < 1E-05)

Base call quality data from DBCLS SRA