Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
KDM1A

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

GEO Accession
GSM1104352
cell type
HeLa S3
cell cycle phase
asynchronous population
antibody
LSD1
antibody information
custom protein A purified
internal reference
110602_lane2

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
25902392
Reads aligned (%)
80.6
Duplicates removed (%)
17.6
Number of peaks
894 (qval < 1E-05)

hg38

Number of total reads
25902392
Reads aligned (%)
82.6
Duplicates removed (%)
16.2
Number of peaks
685 (qval < 1E-05)

Base call quality data from DBCLS SRA