SRX254612
GSM1104351: HeLaS3.SFMBT1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SFMBT1

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa S3
cell type
HeLa S3
cell cycle phase
asynchronous population
antibody
SFMBT1
antibody information
custom (rb4731 LOT#110518)
internal reference
110316_lane8

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
26408877
Reads aligned (%)
97.5
Duplicates removed (%)
55.2
Number of peaks
301 (qval < 1E-05)

hg19

Number of total reads
26408877
Reads aligned (%)
97.0
Duplicates removed (%)
56.2
Number of peaks
341 (qval < 1E-05)

Base call quality data from DBCLS SRA