SRX2538084
ChIP-seq of A704 BAF180WT+HA

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Kidney
Cell type
A-704
Primary Tissue
Kidney
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

isolate
not applicable
age
not applicable
biomaterial_provider
ATCC
sex
not applicable
tissue
kidney
cell_line
A704
disease_stage
clear cell renal carcinoma
sample_type
BAF180 WT with HA tag

Sequenced DNA Library

library_name
b1BA704HA_CHIPSEQ
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
144095215
Reads aligned (%)
95.6
Duplicates removed (%)
24.4
Number of peaks
34756 (qval < 1E-05)

hg19

Number of total reads
144095215
Reads aligned (%)
95.1
Duplicates removed (%)
25.3
Number of peaks
36174 (qval < 1E-05)

Base call quality data from DBCLS SRA